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1

An Algebraic Representation of RNA Secondary Structures

Magarshak, Yuri, Benham, Craig J.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1992

Language:

english

File:

PDF, 1.02 MB

english, 1992

2

Scale-dependent impacts of urban and agricultural land use on nutrients, sediment, and runoff

Lacher, Iara L., Ahmadisharaf, Ebrahim, Fergus, Craig, Akre, Thomas, Mcshea, William J., Benham, Brian L., Kline, Karen S.

Journal:

Science of The Total Environment

Year:

2019

Language:

english

File:

PDF, 2.28 MB

english, 2019

3

DNA TOPOLOGY-MEDIATED CONTROL OF GLOBAL GENE EXPRESSION IN ESCHERICHIA COLI

Hatfield, G. Wesley, Benham, Craig J.

Journal:

Annual Review of Genetics

Year:

2002

Language:

english

File:

PDF, 473 KB

english, 2002

4

Energetics of superhelicity and of B-Z transitions in superhelical DNA

Craig J. Benham

Journal:

Cell Biochemistry and Biophysics

Year:

1987

Language:

english

File:

PDF, 682 KB

english, 1987

5

Energetics of Coupled Twist and Writhe Changes in Closed Circular pSM1 DNA

William R. Bauer, Hisako Ohtsubo, Eiichi Ohtsubo, Craig J. Benham

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 1.52 MB

english, 1995

6

Comprehensive analysis of entire mitochondrial genome by long-range PCR and next generation sequencing for the diagnosis of mitochondrial disorders: Yield of 216 cases

Renkui Bai, Jaimie Higgs, Sharon Suchy, Mustafa Saifi, Melanie Knight, Sabrina Buchholz, Sonia Benhamed, Dolores Arjona, Barbara Boggs, Craig Chinault, Yuriy Shevchenko, Nizar Smaoui, Gabriele Richard

Journal:

Year:

2012

Language:

english

File:

PDF, 64 KB

english, 2012

7

PCR-based target sequence enrichment and next generation sequencing of 24 nuclear genes for the diagnosis of mitochondrial disorders: Yield of 262 cases

Renkui Bai, Jaimie Higgs, Sharon Suchy, Mustafa Saifi, Melanie Knight, Federica Gibellini, Sabrina Buchholz, Sonia Benhamed, Dolores Arjona, Barbara Boggs, Craig Chinault, Yuriy Shevchenko, Nizar Smao

Journal:

Year:

2012

Language:

english

File:

PDF, 81 KB

english, 2012

8

PCR-based targeted enrichment and next-generation sequencing of 101 nuclear genes for the diagnosis of mitochondrial disorders

Renkui Bai, Jaimie Higgs, Sharon Suchy, Federica Gibellini, Melanie Knight, Sabrina Buchholz, Sonia Benhamed, Dolores Arjona, Craig Chinault, Rhonda Brandon, Nizar Smaoui, Gabriele Richard, Sherri Bal

Journal:

Year:

2012

Language:

english

File:

PDF, 59 KB

english, 2012

9

[The IMA Volumes in Mathematics and its Applications] Mathematics of DNA Structure, Function and Interactions Volume 150 ||

Benham, Craig John, Harvey, Stephen, Olson, Wilma K., Sumners, De Witt, Swigon, David

Year:

2009

Language:

english

File:

PDF, 14.87 MB

english, 2009

10

[The IMA Volumes in Mathematics and its Applications] Mathematics of DNA Structure, Function and Interactions Volume 150 || Perspectives On DNA Looping

Benham, Craig John, Harvey, Stephen, Olson, Wilma K., Sumners, De Witt, Swigon, David

Year:

2009

Language:

english

File:

PDF, 1.02 MB

english, 2009

11

The cylindrical Poisson–Boltzmann equation. I. Transformations and general solutions

Benham, Craig J.

Journal:

The Journal of Chemical Physics

Year:

1983

Language:

english

File:

PDF, 540 KB

english, 1983

12

WRITHING AND LINKING DENSITIES FOR CLOSED, CIRCULAR DNA

BENHAM, CRAIG, MILLER, DAVID

Journal:

Journal of Knot Theory and Its Ramifications

Year:

2000

Language:

english

File:

PDF, 1.20 MB

english, 2000

13

FIXED-WRITHE ISOTOPIES AND THE TOPOLOGICAL CONSERVATION LAW FOR CLOSED, CIRCULAR DNA

MILLER, DAVID, BENHAM, CRAIG

Journal:

Journal of Knot Theory and Its Ramifications

Year:

1996

Language:

english

File:

PDF, 353 KB

english, 1996

14

Projecting land use change impacts on nutrients, sediment and runoff in multiple spatial scales: Business-as-usual vs. stakeholder-informed scenarios

Ahmadisharaf, Ebrahim, Lacher, Iara L., Fergus, Craig, Benham, Brian L., Akre, Thomas, Kline, Karen S.

Journal:

Journal of Cleaner Production

Year:

2020

File:

PDF, 11.18 MB

2020

15

Analysis of the Structure of a Natural Alternating d(TA)n Sequence in Yeast Chromatin

ARANDA, AGUSTÍN, PÉREZ-ORTÍN, JOSÉ E., BENHAM, CRAIG J., DEL OLMO, MARCEL.LÍ

Journal:

Year:

1997

Language:

english

File:

PDF, 853 KB

english, 1997

16

An elastic model of the large-scale structure of duplex DNA

Craig J. Benham

Journal:

Year:

1979

Language:

english

File:

PDF, 749 KB

english, 1979

17

Kinetics of reactions involving DNA containing stress-induced single-stranded regions

Craig J. Benham

Journal:

Year:

1980

Language:

english

File:

PDF, 1.16 MB

english, 1980

18

Stable cruciform formation at inverted repeat sequences in supercoiled DNA

Craig J. Benham

Journal:

Year:

1982

Language:

english

File:

PDF, 1019 KB

english, 1982

19

Geometry and mechanics of DNA superhelicity

Craig J. Benham

Journal:

Year:

1983

Language:

english

File:

PDF, 1019 KB

english, 1983

20

The role of the stress resultant in determining mechanical equilibria of superhelical DNA

Craig J. Benham

Journal:

Year:

1987

Language:

english

File:

PDF, 397 KB

english, 1987

21

Catastrophes in statistical biophysics

Craig J. Benham, John J. Kozak

Journal:

Behavioral Science

Year:

1978

Language:

english

File:

PDF, 457 KB

english, 1978

22

Multiple collagen I gene regulatory elements have sites of stress-induced DNA duplex destabilization and nuclear scaffold/matrix association potential

Christian Mielke, Morten O. Christensen, Ole Westergaard, Jürgen Bode, Craig J. Benham, Michael Breindl

Journal:

Journal of Cellular Biochemistry

Year:

2002

Language:

english

File:

PDF, 303 KB

english, 2002

23

Denaturation: an example of a catastrophe II. Two-state transitions

Craig J. Benham, John J. Kozak

Journal:

Journal of Theoretical Biology

Year:

1976

Language:

english

File:

PDF, 1.29 MB

english, 1976

24

Denaturation: An example of a catastrophe III. Phase diagrams for multistate transformations

Craig J. Benham, John J. Kozak

Journal:

Journal of Theoretical Biology

Year:

1977

Language:

english

File:

PDF, 721 KB

english, 1977

25

Peripheral doublet microtubules and wave generation in eukaryotic flagella

Philip H. Crowley, Craig J. Benham, Suzanne M. Lenhart, Janet L. Morgan

Journal:

Journal of Theoretical Biology

Year:

1981

Language:

english

File:

PDF, 943 KB

english, 1981

26

Continuous 28-day iododeoxyuridine infusion and hyperfractionated accelerated radiotherapy for malignant glioma: a phase I clinical study

Craig A. Schulz, Minesh P. Mehta, Benham Badie, Cornelius J. McGinn, H.Ian Robins, Lori Hayes, Rick Chappell, Jen Volkman, Kim Binger, Rhoda Arzoomanian, Kris Simon, Dona Alberti, Christine Feierabend

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2004

Language:

english

File:

PDF, 132 KB

english, 2004

27

Disulfide bonding patterns and protein topologies

Craig J. Benham, M. Saleet Jafri

Journal:

Protein Science

Year:

1993

Language:

english

File:

PDF, 1.24 MB

english, 1993

28

The distribution of inverted repeat sequences in theSaccharomyces cerevisiaegenome

Eva M. Strawbridge, Gary Benson, Yevgeniy Gelfand, Craig J. Benham

Journal:

Current Genetics

Year:

2010

Language:

english

File:

PDF, 1.57 MB

english, 2010

29

Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism

Michael L. Opel, Kimberly A. Aeling, Walter M. Holmes, Reid C. Johnson, Craig J. Benham, G. Wesley Hatfield

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 349 KB

english, 2004

30

Theoretical analysis of transitions between B- and Z-conformations in torsionally stressed DNA

Benham, Craig J.

Journal:

Year:

1980

File:

PDF, 248 KB

1980

31

Loss of FBP function arrests cellular proliferation and extinguishes c-myc expression

He, Liusheng, Liu, Juhong, Collins, Irene, Sanford, Suzanne, O'Connell, Brian, Benham, Craig J., Levens, David

Journal:

The EMBO Journal

Year:

2000

Language:

english

File:

PDF, 1.19 MB

english, 2000

32

An influenza virus containing nine different RNA segments

Masayoshi Enami, Gita Sharma, Craig Benham, Peter Palese

Journal:

Year:

1991

Language:

english

File:

PDF, 1.45 MB

english, 1991

33

Role for a region of helically unstable DNA within the Epstein–Barr virus latent cycle origin of DNA replication oriP in origin function

Zhanna Polonskaya, Craig J. Benham, Janet Hearing

Journal:

Year:

2004

Language:

english

File:

PDF, 640 KB

english, 2004

34

Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress

Huiquan Wang, Craig J Benham

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 892 KB

english, 2006

35

Visualization of the Detailed Structure of Plasmid DNA

Tanaka, Hiroyuki, Mielke, Steven P., Benham, Craig J., Kawai, Tomoji

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 1008 KB

english, 2008

36

The Free Energy, Enthalpy and Entropy of Native and of Partially Denatured Closed Circular DNA

William R. Bauer, Craig J. Benham

Journal:

Journal of Molecular Biology

Year:

1993

File:

PDF, 761 KB

1993

37

Duplex Destabilization in Superhelical DNA is Predicted to Occur at Specific Transcriptional Regulatory Regions

Craig J. Benham

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 470 KB

english, 1996

38

Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions

Craig Benham, Terumi Kohwi-Shigematsu, Jürgen Bode

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 392 KB

english, 1997

39

Sequential determination of ligands binding to discrete components in heterogeneous mixtures by iterative panning and blocking (IPAB)

Bradley T. Messmer, Craig J. Benham, David S. Thaler

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 305 KB

english, 2000

40

Extrusion of an imperfect palindrome to a cruciform in superhelical DNA: complete determination of energetics using a statistical mechanical model

Craig J Benham, Anne G Savitt, William R Bauer

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 438 KB

english, 2002

41

Energetics of the strand separation transition in superhelical DNA

Craig J. Benham

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 1.71 MB

english, 1992

42

Correlations between Scaffold/Matrix Attachment Region (S/MAR) Binding Activity and DNA Duplex Destabilization Energy

Jürgen Bode, Silke Winkelmann, Sandra Götze, Steven Spiker, Ken Tsutsui, Chengpeng Bi, Prashanth A.K., Craig Benham

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 524 KB

english, 2006

43

Unpaired Structures in SCA10 (ATTCT)n·(AGAAT)n Repeats

Vladimir N. Potaman, John J. Bissler, Vera I. Hashem, Elena A. Oussatcheva, Lu Lu, Luda S. Shlyakhtenko, Yuri L. Lyubchenko, Tohru Matsuura, Tetsuo Ashizawa, Michael Leffak, Craig J. Benham, Richard R

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 2.11 MB

english, 2003

44

Germ-line transcripts of the immunoglobulin λ J–C clusters in the mouse: characterization of the initiation sites and regulatory elements

Holger Engel, Holger Rühl, Craig J Benham, Jürgen Bode, Siegfried Weiss

Journal:

Molecular Immunology

Year:

2001

Language:

english

File:

PDF, 356 KB

english, 2001

45

DNA Mechanics

Benham, Craig J., Mielke, Steven P.

Journal:

Annual Review of Biomedical Engineering

Year:

2005

Language:

english

File:

PDF, 354 KB

english, 2005

46

Brownian dynamics of double-stranded DNA in periodic systems with discrete salt

Mielke, Steven P., Grønbech-Jensen, Niels, Benham, Craig J.

Journal:

Physical Review E

Year:

2008

Language:

english

File:

PDF, 562 KB

english, 2008

47

The statistics of superhelicity

Craig J. Benham

Journal:

Journal of Molecular Biology

Year:

1978

Language:

english

File:

PDF, 663 KB

english, 1978

48

Theoretical analysis of competitive conformational transitions in torsionally stressed DNA

Craig J. Benham

Journal:

Journal of Molecular Biology

Year:

1981

Language:

english

File:

PDF, 1.68 MB

english, 1981

49

The equilibrium statistical mechanics of the helix–coil transition in torsionally stressed DNA

Benham, Craig J.

Journal:

The Journal of Chemical Physics

Year:

1980

Language:

english

File:

PDF, 791 KB

english, 1980

50

Environmental influences on DNA superhelicity

Brady, George W., Satkowski, Michael, Foos, David, Benham, Craig J.

Journal:

Journal of Molecular Biology

Year:

1987

Language:

english

File:

PDF, 832 KB

english, 1987

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